GgaEX0018757 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33591336-33592176:-
Coord C1 exon
chr7:33592050-33592176
Coord A exon
chr7:33591750-33591901
Coord C2 exon
chr7:33591336-33591460
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCTTTAAAATTAATCTTTAGGAA
3' ss Score
8.33
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTATTTATTTTGGACAGAGTGGGGACAGATTCCTTGCATAGGAAAGGCATATTTAGATGGATCTGAGAAGGTTGTTCTTGTGAGCCTGGGGATTGTGTGGCCTAATGGGATTTCCATTGACTATGAG
Seq A exon
GAAAATAAATTATATTGGTGTGATGCTCGTACCGACAAGATAGAAAGAATTGACCTTGAGAGTGGAGGGAATCGGGAGATTGTGCTGTCAGGGAGCAATGTGGATATGTTTTCAGTTGCGGTGTTTGGAGCTTACATCTACTGGTCTGACAG
Seq C2 exon
AGCACATGCAAATGGCTCTATTAGAAGAGGCCACAAGAATGAGGCCACGGATGCTGTGACCATGAGGACTGGCCTTGGAATAAACCTGAAGGAAGTGAAAGTCTTTAATAGAGCACGAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'58-65,'58-64,59-65
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=97.7)
A:
PF0005812=Ldl_recept_b=WD(100=76.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGACAGAGTGGGGACAGA
R:
TTCTCTCGTGCTCTATTAAAGACT
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]