DreEX6037439 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36714148-36717795:+
Coord C1 exon
chr9:36714148-36714288
Coord A exon
chr9:36717414-36717539
Coord C2 exon
chr9:36717664-36717795
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACCATCATTGTCTTTCTCAGGTA
3' ss Score
10.44
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTGGTAAGCTATGGTGGGCTGATGATGATCTGGCTCAGTTGGGGACGGTTGCCAAACGGGACGGACGAAACCCAGTGGTGCTGCGCAATAAGACCAGCGGATTGGTGCACATGAAGGTTTATGACCGAGATGGTCAGAAAG
Seq A exon
GTAGAAATGCCTGTCAGTTAAACAACGGCGGCTGCTCTCAGCTCTGTCTGCCCACATCAGAAAATACTCGAACCTGCGCCTGCACCATCGGATACAACTTGCGCAACGACCGGCTCTCCTGTGAAG
Seq C2 exon
GCCTGAACTCTTTCCTGATGTACTCTTTTCACGAGGGGATTCGTGGCATCGCTTTGGACCCCAATGACCATACCGAGACCCTGATGCCCATCAGCGGCACCTTGTTTGCAGTTGGTGTGGACTTTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'31-33,'31-32,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=88.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAAGCTATGGTGGGCTGA
R:
CACCAACTGCAAACAAGGTGC
Band lengths:
257-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]