GgaEX6043159 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33598269-33602548:-
Coord C1 exon
chr7:33602408-33602548
Coord A exon
chr7:33600037-33600162
Coord C2 exon
chr7:33598269-33598400
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCTGTACTGTTATGTTCCAGGTA
3' ss Score
10.57
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
ATAAAAAGCTTTGGTGGGCAGACCAGAATTTAGCTCAGATTGGAACCTGTAACAAACGAGATGGAAGGAACCCAACTATCCTGCGAAACAAGACTTCAGGTGTTGTGCATATGAAAGTATATGATAAAGCAGCACAGCAAG
Seq A exon
GTAGCAATTCCTGTCAATTCAATAATGGTGGATGTTCCCAGCTCTGTTTACCAACATCAGAAAGTACAAGAACCTGTGTTTGTACAGTAGGCTACAACCTCCAAAAAAACCGCATGGCATGCAAAG
Seq C2 exon
GTATAGAATCATTTATTATGTATTCTGTTCATGAAGGGATTAGAGGAATTTCTCTTGATCCAAATGATAAAATGGAAGCTTTAATGCCTGTATCTGGAACCTCATTTGCAGTGGGCATAGACTTCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'51-59,'51-58,52-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGCTTTGGTGGGCAGACC
R:
CCCACTGCAAATGAGGTTCCA
Band lengths:
253-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]