HsaEX6015742 @ hg38
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:140769213-140776238:-
Coord C1 exon
chr2:140776098-140776238
Coord A exon
chr2:140770881-140771006
Coord C2 exon
chr2:140769213-140769344
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTCATTCTATGCAGGCA
3' ss Score
8.93
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATAAGAAACTGTGGTGGGCAGACCAAAACTTAGCCCAGCTAGGAACCTGCAGCAAAAGAGACGGAAGAAACCCCACCATCCTACGGAATAAGACTTCTGGGGTAGTTCATATGAAAGTCTATGATAAAGAAGCACAGCAAG
Seq A exon
GCAGCAATTCCTGCCAACTAAACAATGGTGGATGCTCTCAACTTTGTTTACCAACATCTGAAACTACAAGGACTTGTATGTGTACAGTGGGATATTATCTCCAAAAGAACCGTATGTCATGTCAAG
Seq C2 exon
GTATAGAATCATTTCTTATGTACTCTGTTCATGAAGGAATCAGGGGAATACCTCTTGAACCAAGTGACAAAATGGATGCTTTGATGCCTATATCAGGAACTTCATTTGCCGTGGGAATAGATTTCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702_MULTIEX3-13/13=12-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAACTGTGGTGGGCAGAC
R:
TCCCACGGCAAATGAAGTTCC
Band lengths:
255-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains