MmuEX6101041 @ mm10
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:41185870-41193678:-
Coord C1 exon
chr2:41193538-41193678
Coord A exon
chr2:41188813-41188938
Coord C2 exon
chr2:41185870-41186001
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTCCCTCTCTATAGGCA
3' ss Score
11.92
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
ATAAGAAACTCTGGTGGGCAGATCAAAACTTAGCTCAACTGGGAACTTGTAACAAAAGAGATGGAAGAAATCCCAGCATTCTGCGAAATAAGACTTCCGGAGTTGTTCACATGAAAGTGTATGACAAAGAAGCACAACAAG
Seq A exon
GCAGCAATTCTTGCCAAGTAAACAATGGTGGGTGTTCTCAGCTTTGCTTACCAACATCGGAAACAACCAGGACTTGCATGTGTACAGTGGGATATTATCTCCAGAAGAACCGCATGTCATGCCAAG
Seq C2 exon
GTATAGAATCTTTTCTTATGTACTCTGTTCATGAAGGAATCCGGGGGATCCCTCTTGAGCCACGTGACAAGGTGGATGCCCTGATGCCAATATCAGGAGCTGCTTTTGCTGTGGGGATAGACTTCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'57-53,'57-52,58-53
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=86.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTCTGGTGGGCAGATCA
R:
TATCCCCACAGCAAAAGCAGC
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types