DreEX6037443 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36690671-36696705:+
Coord C1 exon
chr9:36690671-36690802
Coord A exon
chr9:36690919-36691146
Coord C2 exon
chr9:36696531-36696705
Length
228 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGGCCTCCACATCAGCGC
3' ss Score
3.69
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTTCAAACCCATGCGAAGGAAACGATGGAAGAGGTCCTTGTTCCCATCTTTGTCTCATTGATTACAACCGCACAGCATCCTGCTCGTGTCCTCATCTCATGAAGCTCTCGCTCAACAACCGCTCTTGTGTGG
Seq A exon
CGCTGAAGAAGTTCTTGTTGTACGTGAGGCGGTCAGAGATCCGCGGAGTGGACATCGATAATCCGTACATGAACGTCATGACTGCTTTGACGGTTCCTGACATTGATGACGTGACCGTGGTTGATTATGACGCTCTCGAGGAAAGGATATACTGGGCTGATGTTAAGACCCAAACAATAAAACGTGCCTTCATCAATGGAACAGGCCTTCAGACTGTCATTTCTGGAG
Seq C2 exon
ATATTCAAAACTGCCGTGGGCTGGCAATAGATTGGCTCTCGAGGAACATGTATTGGCTGAGCTCTGAGAATGAGGAGACGCAGATCAATGTTGCCCGACTAGACGGATCTCTGAAAACCTCAGTCATCCACGGGATTGATAAACCAAAGTGTCTGACTGTGCATCCAGCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'26-28,'26-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=88.6)
A:
PF0005812=Ldl_recept_b=PU(68.3=36.8)
C2:
PF0005812=Ldl_recept_b=PD(26.8=18.6),PF0005812=Ldl_recept_b=WD(100=71.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCGAAGGAAACGATGGA
R:
GCTGGATGCACAGTCAGACAC
Band lengths:
293-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]