GgaEX7006224 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31500998-31505387:-
Coord C1 exon
chr7:31505256-31505387
Coord A exon
chr7:31503354-31503581
Coord C2 exon
chr7:31500998-31501172
Length
228 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTATCTTCTAACAGAAA
3' ss Score
11.37
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTTCAAATCCATGCGCTGCTAATGAGGGCAGAGGTCCGTGTTCTCACATGTGTCTGATCAGTCACAACAGAAGTGCTGCATGTGCATGTCCACATCTGATGAAACTTTCTTTAGACAAGAAAACATGTTATG
Seq A exon
AAAGGAAGAAATTTCTTCTTTATGCAAGACGTTCAGAAATAAGAGGAGTGGACATAGACAACCCCTACTTCAACTTCATTACAGCCTTCACTGTTCCTGACATTGATGATGTGACGGTCATAGATTTTGATGCTGTTGAGGAGCGGTTATATTGGACTGATGTGAAAACACAAACCATCAAGCGTGCCTTCATTAACGGCACTGGTTTAGAAACTATTATTTCAAGAG
Seq C2 exon
ATATTCAGAGTATCAGAGGTCTTGCAGTGGATTGGATATCACGTAATTTATACTGGATTAGCTCAGAATTTGATGAAACGCAAATTAATGTGGCACATTTAGATGGTTCCTTAAAAACTTCAATCATCCATGGAATTGATAAACCCCAGTGTCTTGCAGTTCACCCAGTAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'40-63,'40-62,41-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.7)
A:
PF0005812=Ldl_recept_b=PU(70.7=37.7)
C2:
PF0005812=Ldl_recept_b=PD(26.8=18.6),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATGCGCTGCTAATGAGG
R:
ACTGGGTGAACTGCAAGACAC
Band lengths:
295-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]