DreEX6037444 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36677887-36691146:+
Coord C1 exon
chr9:36677887-36678131
Coord A exon
chr9:36690671-36690802
Coord C2 exon
chr9:36690919-36691146
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTCTGTGTTTTTCAGCTT
3' ss Score
11.41
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CTCAGATGCGATATATTCAGCCCTGTATGATGGCAGCGGGGTCATCGAGATCCTCAGGGGCCATGAGTACCTGTCGCACCCATTCGCTGTGTCTCTGTTTGGAGGTGGCGTGTACTGGACAGACTGGAGGACCAACACTTTAGCCAGAGCGAATAAATGGACAGGCCACAATGTCACTGTGATCCAAAAGACAAGCGCACAGCCGTTTGATCTAGAGATTTACCATCCTAGCCGACAACCTCAAG
Seq A exon
CTTCAAACCCATGCGAAGGAAACGATGGAAGAGGTCCTTGTTCCCATCTTTGTCTCATTGATTACAACCGCACAGCATCCTGCTCGTGTCCTCATCTCATGAAGCTCTCGCTCAACAACCGCTCTTGTGTGG
Seq C2 exon
CGCTGAAGAAGTTCTTGTTGTACGTGAGGCGGTCAGAGATCCGCGGAGTGGACATCGATAATCCGTACATGAACGTCATGACTGCTTTGACGGTTCCTGACATTGATGACGTGACCGTGGTTGATTATGACGCTCTCGAGGAAAGGATATACTGGGCTGATGTTAAGACCCAAACAATAAAACGTGCCTTCATCAATGGAACAGGCCTTCAGACTGTCATTTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.159 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=88.6)
C2:
PF0005812=Ldl_recept_b=PU(68.3=36.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCTGTTTGGAGGTGGC
R:
GTCAGGAACCGTCAAAGCAGT
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]