RnoEX6016703 @ rn6
Exon Skipping
Gene
ENSRNOG00000030243 | AABR07051892.1
Description
NA
Coordinates
chr3:25921427-25933708:-
Coord C1 exon
chr3:25933464-25933708
Coord A exon
chr3:25923754-25923885
Coord C2 exon
chr3:25921427-25921626
Length
132 bp
Sequences
Splice sites
3' ss Seq
TATTTCACTGTCGTTGGCAGCTC
3' ss Score
6.71
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTCAGATGCTATTTATTCAGCCTTCTATGATGGAACAAACATGATAGAAATTATCCGAGGACATGAATACCTGTCACATCCCTTTGCTGTGTCTTTGTATGGGAGTGAGGTGTACTGGACTGATTGGAGGACCAACACACTGGCCAAAGCCAACAAGTGGACAGGGCAGAATGTCAGTGTGATTCAGAAGACCAGCGCACAGCCATTTGACCTTCAGATTTACCATCCCAGTAGACAGCCACAAG
Seq A exon
CTCCCAATCCTTGTGCAGCCAATGAAGGGAGAGGCCCCTGCTCTCACCTGTGTCTCATCAATCATAACAGGAGCGCAGCCTGTGCCTGCCCCCACCTAATGAAGCTCTCCTCCGACAAGAAAACCTGCTATG
Seq C2 exon
AAATGAAAAAATTTCTTCTTTATGCAAGACGTTCTGAGATCCGAGGGGTGGACATCGACAATCCATATGCGAACTTCATCACAGCCTTCACTGTCCCCGATATCGATGACGTTGCTGTAATAGACTTCGATGCCTCTGAAGAACGTTTGTACTGGACAGACATCAAGACACAAACCATTACACGGGCTTTCATTAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030243-'25-29,'25-28,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=86.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGTGAGGTGTACTGGAC
R:
ACGTCATCGATATCGGGGACA
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]