MmuEX6101035 @ mm10
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:41282037-41295709:-
Coord C1 exon
chr2:41295465-41295709
Coord A exon
chr2:41284095-41284226
Coord C2 exon
chr2:41282037-41282264
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTCACCATGTCTTTGGCAGCTC
3' ss Score
7.81
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTCAGATGCTATTTATTCAGCTTTCTATGATGGAACAAACATGATAGAAATTATCCGAGGACACGAGTACCTGTCACATCCCTTTGCTGTGTCTTTGTATGGGAGTGAGGTGTACTGGACTGATTGGAGGACCAACACACTGGCTAAAGCCAACAAGTGGACAGGGCAGAATGTCAGTGTGATCCAGAAGACGAGTGCACAACCATTCGACCTTCAGATTTACCATCCCAGTAGACAGCCACAAG
Seq A exon
CTCCCAACCCTTGTGCAGCCAATGAAGGTAGAGGCCCCTGCTCTCACCTGTGCCTCATCAATCATAATAGGAGTGCAGCTTGTGCCTGCCCCCACCTAATGAAGCTTTCCTCTGACAAGAAAACCTGCTATG
Seq C2 exon
AAATGAAAAAATTTCTTCTTTATGCAAGACGTTCTGAGATCCGAGGGGTGGACATTGACAATCCCTATGTGAACTTCATCACAGCCTTCACTGTCCCAGATATTGACGATGTTGCTGTAATAGACTTCGATGCCTCTGAAGAGCGTTTGTACTGGACAGACATCAAAACACAAACCATTACACGGGCTTTCATTAACGGGACGGGACTAGAGACAGTTATTTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'48-44,'48-43,50-44
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=86.7)
C2:
PF0005812=Ldl_recept_b=PU(70.7=37.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGAGGACACGAGTACCTG
R:
GGGATTGTCAATGTCCACCCC
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types