GgaEX0018751 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33619173-33628104:-
Coord C1 exon
chr7:33627860-33628104
Coord A exon
chr7:33621075-33621206
Coord C2 exon
chr7:33619173-33619400
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATTTCATTATACAATTTTAGCTT
3' ss Score
6.22
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATCAGATGCTATTTATTCTGCATTATATGATGGAACCGGCATGATAGAGATTATACGGGGTCATGAATATCTTTCTCACCCCTTTGCTGTTTCTTTGTATGGGAGCGAAGTATATTGGACAGATTGGCGGACCAATACACTTGCAAAAGCCAATAAATGGACCGGCCAGAATGTCAGCGTTATACAAAAAACAAGTGCTCAGCCCTTTGATCTTCAGATCTATCACCCAAGTCGTCAGCCACAAG
Seq A exon
CTTCAAATCCATGCGCTGCTAATGAGGGCAGAGGTCCGTGTTCTCACATGTGTCTGATCAGTCACAACAGAAGTGCTGCATGTGCATGTCCACATCTGATGAAACTTTCTTTAGACAAGAAAACATGTTATG
Seq C2 exon
AAAGGAAGAAATTTCTTCTTTATGCAAGACGTTCAGAAATAAGAGGAGTGGACATAGACAACCCCTACTTCAACTTCATTACAGCCTTCACTGTTCCTGACATTGATGATGTGACGGTCATAGATTTTGATGCTGTTGAGGAGCGGTTATATTGGACTGATGTGAAAACACAAACCATCAAGCGTGCCTTCATTAACGGCACTGGTTTAGAAACTATTATTTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'41-52,'41-51,45-52
Average complexity
S
Mappability confidence:
91%=86=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=86.7)
C2:
PF0005812=Ldl_recept_b=PU(70.7=37.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGTGCTCAGCCCTTTGA
R:
TGAAGGCACGCTTGATGGTTT
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]