DreEX6098170 @ danRer10
Exon Skipping
Gene
ENSDARG00000004789 | lrp1ba
Description
low density lipoprotein receptor-related protein 1Ba [Source:ZFIN;Acc:ZDB-GENE-050208-608]
Coordinates
chr22:14567860-14579160:-
Coord C1 exon
chr22:14578916-14579160
Coord A exon
chr22:14573748-14573879
Coord C2 exon
chr22:14567860-14568087
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTGAATGTGTTTTTTTCCAGCGG
3' ss Score
8.6
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATCTGACGCTATATACTCTGCTCTATATGATGGCACGGGGGTGATTGAGATTCTCAGAGGCCACGAGTTCCTCTCTCACCCCTTCGCCGTGTCTCTTTTTGGAGGAAACGTCTACTGGACCGACTGGAGGACCAATACATTGACCAAAGCCAACAAATGGACTGGAGCCAATGTGACGGTCATTCAAAAAACCAGCGCTCAGCCCTTCGACCTGGAGATTTACCATCCCAGCCGGCAGCCACAGA
Seq A exon
CGGTGAGCCCGTGTGCTGGTAATGGAGGCCGGGGTCACTGTTCTCACCTCTGTCTGCTCAATTATAATGGCTCTGCTTCCTGCTCCTGTCCACATCTCATGAAGCTCTCAGCCAATAACAGCACATGCCAAG
Seq C2 exon
GAGTGAAGAGGTTTCTCTTGTACGCTCGCAGATCTGAGATTCGTGGTGTGGACATTGATAACCCGTATCTGAACGTGATCATGGCTCTGACCGTTCCTGATATCGATGACGTGACGTCGATGGATTACGATGCTGTGGAGGAGAGGATTTACTGGGCTGATGTGAAGAGCAGAACTATAAAACGAGCGTTTATTAACGGAACCCAACTGCAGACCGTCTTGTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004789-'27-29,'27-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=88.6)
C2:
PF0005812=Ldl_recept_b=PU(68.3=36.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCAATGTGACGGTCATT
R:
CTGCTCTTCACATCAGCCCAG
Band lengths:
254-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]