DreEX6037451 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36608183-36614180:+
Coord C1 exon
chr9:36608183-36608305
Coord A exon
chr9:36610310-36610450
Coord C2 exon
chr9:36614061-36614180
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTTTTTCTTCTGAAGACT
3' ss Score
6.21
5' ss Seq
GCTGTACGT
5' ss Score
5.68
Exon sequences
Seq C1 exon
GTGACAATCCCTGCCGGGTGAATTATGGTGGTTGTGGTACCCTGTGTTTGGCCGTCCCAGGAGGCAGAGTTTGCGCATGTGCTGACAACCAGCACCTGGACAAGCATAATCTCACCTGCTCTG
Seq A exon
ACTCTGCAGGTCAAGAAGAGCCCCAGCGGTGCAGAAGTGATGAGTTTCAGTGCAGGAACGGGCGCTGCATCCGAGTCAATTGGATTTGTGATGGAGATGATGACTGTTTAGATGGCAGCGATGAGGAGCCTCACATATGCT
Seq C2 exon
CTAACCACAGTTGTCCAATTGACCAGTTCAAGTGTCCCAGTAACCGTTGTATTCCCAAGAGATGGCTTTGTGATGGAGCTGATGACTGTGGAGATAATGAAGATGAGTCCAATAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=87.8)
A:
PF0005713=Ldl_recept_a=WD(100=83.0)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCGGGTGAATTATGGTG
R:
TTGGACTCATCTTCATTATCTCCACA
Band lengths:
226-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]