HsaEX0036418 @ hg38
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:140989532-141005457:-
Coord C1 exon
chr2:141005335-141005457
Coord A exon
chr2:140993995-140994135
Coord C2 exon
chr2:140989532-140989657
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTGGGTTTTTTTAACTCTAGTTA
3' ss Score
5.59
5' ss Seq
GCTGTATGT
5' ss Score
5.1
Exon sequences
Seq C1 exon
GTGACAATATGTGCCGAGTAAATAATGGGGGCTGTAGTACACTTTGCTTGGCTATCCCAGGAGGCCGGGTGTGTGCTTGTGCCGATAATCAACTTTTGGATGAAAATGGGACAACTTGCACAT
Seq A exon
TTAATCCTGGAGAAGCACTACCTCACATATGTAAAGCTGGAGAGTTTCGCTGCAAAAACAGACACTGTATCCAAGCTCGGTGGAAATGTGATGGCGACGATGACTGCCTAGACGGAAGCGATGAGGATTCAGTAAACTGCT
Seq C2 exon
TCAATCATAGCTGTCCTGATGATCAGTTTAAATGCCAGAATAATCGCTGCATCCCCAAGAGATGGCTTTGTGATGGAGCTAATGACTGTGGGAGCAATGAAGATGAATCCAATCAAACTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
PF0005713=Ldl_recept_a=WD(100=81.2)
C2:
PF0005713=Ldl_recept_a=WD(100=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTGCCGAGTAAATAATGGGGG
R:
CTGTGCAAGTTTGATTGGATTCA
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development