RnoEX0002999 @ rn6
Exon Skipping
Gene
ENSRNOG00000030243 | AABR07051892.1
Description
NA
Coordinates
chr3:26056729-26077745:-
Coord C1 exon
chr3:26077645-26077745
Coord A exon
chr3:26067219-26067359
Coord C2 exon
chr3:26056729-26056829
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTTTTTCAACTCTAGTTA
3' ss Score
8.37
5' ss Seq
GCTGTATGT
5' ss Score
5.1
Exon sequences
Seq C1 exon
CAATGGGGGCTGTGGCACGCTCTGCCTGGCCATTCCAGGAGGCCGTGTGTGCGCCTGTGCTGATAATCAGCTTTTGGATGAAAATGGAACTACTTGCACAT
Seq A exon
TTAATCCTGAAGAAATAATATTCCATATATGTAAACCTGGAGAATTTCGCTGCAAAAACAAACACTGTATTCAAGCTCGGTGGAAGTGTGATGGCGATGATGACTGCCTAGACGGGAGCGATGAAGACTCTGTAACATGCT
Seq C2 exon
TCAATCATAGCTGCCCGGAGGATCAGTTTAAATGCCAGAATAATCGTTGTATCCCCAAGAGATGGCTTTGTGATGGAGCAAATGATTGTGGGAGCAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030243-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGGGGCTGTGGCAC
R:
TTCATTGCTCCCACAATCATTTGC
Band lengths:
202-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]