GgaEX1033879 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31534353-31540060:-
Coord C1 exon
chr7:31539938-31540060
Coord A exon
chr7:31537967-31538107
Coord C2 exon
chr7:31534353-31534478
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATCCTGGATATTTTTTGTAGTTA
3' ss Score
2.83
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTAACAATGCATGTCGCGTTAACAATGGAGGCTGCAGTACTCTCTGTTTAGCCATTCCTGGAGGCAGAGTTTGTGCCTGTGCTGATAATCAGTTTTTGGAGGAAAACAGTACAACCTGCATGA
Seq A exon
TTAAACATGGAGAAATGCCACCACAGTTGTGCAAAGCTGAACAGTTTCAGTGCAACAATAAGCGTTGTATCCATGATCGCTGGCGCTGTGATGGAGATGATGACTGTTTGGATGGCAGTGATGAGCACGCCGACATTTGCT
Seq C2 exon
TCAATCACAGTTGTCCTGAAAATCAGTTTAAGTGCCAAAATAATCGCTGCATTCCCAAGAGATGGCTTTGTGATGGAGCTAATGACTGTGGTAATAACGAAGATGAATCAAATAAAACCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'25-43,'25-41,26-43
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
PF0005713=Ldl_recept_a=WD(100=81.2)
C2:
PF0005713=Ldl_recept_a=WD(100=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGTCGCGTTAACAATGG
R:
CTGCACAGGTTTTATTTGATTCATCT
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]