DreEX6037459 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36565250-36584086:+
Coord C1 exon
chr9:36565250-36565412
Coord A exon
chr9:36578293-36578515
Coord C2 exon
chr9:36583900-36584086
Length
223 bp
Sequences
Splice sites
3' ss Seq
TCTATTTTGCATTCTTGCAGGAT
3' ss Score
10.12
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACGTGGATCAATTAACTTTTGACTGGCTCACCGGGAACTTTTACTTCGTGGATCAAGCAAGCGACAGGATATTTGTTTGCAACCAACTGGGAGACACCTGCGTTACAGTGGTAGACCTCGACCTGCTGAACCCCAAAGCAATCGCTCTGGATCCACTAATGGG
Seq A exon
GATGCTTTTCTTTACAGATTATGGGAATGTAGCCAAACTGGAGCGCTGCAACATGGACGGCACAAACAGAACTCGACTTGTGGATTACAAGGTTGAACGACCAACAGCAGTTGCACTGGATCTGGTCAAGAAGCTGGTTTATTGGGCAGATGCTTATCTGGATTACATTGAGATGGTGGATTACAATGGCAAAAACAGACACACTATCATGCAGGGATATCAG
Seq C2 exon
GTGGCCCACCTGCATGGATTAGCTGTCTTTGAGGACTACTTGTATGCAACTCGCTCTGAAGCCTCCAGTGGAACAGTGGTGGACATCTTACGGATAAATCGCTTTAATGTCACAGACCCGGAGATGCTAACCAGCATAGGAAATGCAAAAACAATACGGGTTTACCACAAGCTCTGTCAACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=56.0),PF0005812=Ldl_recept_b=PU(71.4=40.0)
C2:
PF0005812=Ldl_recept_b=PD(26.2=17.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTGGATCAAGCAAGCGA
R:
CAGAGCTTGTGGTAAACCCGT
Band lengths:
296-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]