GgaEX6043146 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31555562-31589230:-
Coord C1 exon
chr7:31589068-31589230
Coord A exon
chr7:31558007-31558229
Coord C2 exon
chr7:31555562-31555733
Length
223 bp
Sequences
Splice sites
3' ss Seq
ATTTTATTTTCTTTCTACAGAAA
3' ss Score
10.4
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ATGTGCAGCAAATAGCAATTGATTGGATCACTGGAAACTTTTACTTTCTGGATCATGTCAGTGATAGGATCTTCGTTTGCAACCAGAACGGAACGGTGTGCATTACACTCATTGAGCTGGACCTCAGTAACCCTAAGGCCATAGCTGTTGATCCAACCTCAGG
Seq A exon
AAAGCTTTTCTTTACAGACTACGGGAATGTTGCCAAGGTTGAGAGATGTGACATGGATGGAATGAACAGAACATGGATAGTGGACTCTAAAATTGAACAGCCAACTGCTCTTGCACTTGACCTCATCAATAAATATGTGTACTGGGTTGACATCTATCTGGATAATGTGGAAGTTGTTGACTACGAAGGGAGAAAGAGACATACAGTTATAAAAGGCAGACAA
Seq C2 exon
GTTAGGCATCTCTGTGGTTTGGCAGTATTTGAAAACTACTTATATGCAGTTAATTCAGATAACTTCAGTATTTGGCAAATAAACAGATATAATGGCACTGATGTTCGGTCCCTTACCAGACTTGAAAATGCGAAGGAGATCCGTGTATACCAGAAAAGAACTCAAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'7-43,'7-33,17-43=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=74.5),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=56.0),PF0005812=Ldl_recept_b=PU(71.4=40.0)
C2:
PF0005812=Ldl_recept_b=PD(23.8=17.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATATTTGGGAGGTTGGATAAACGA
R:
TGCACAGGTTTTATTTGATTCATCT
Band lengths:
220-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]