DreEX6037460 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36559550-36578515:+
Coord C1 exon
chr9:36559550-36559807
Coord A exon
chr9:36565250-36565412
Coord C2 exon
chr9:36578293-36578515
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGGCTTGTTTTCCAGACG
3' ss Score
8.66
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AGCCCGGCGAAAGTCCTGCCGCGCTGCTGATTGGAGGCTCGGATAATATTATAATCACAGCCCTAAATGGATCCCGCCTGCAAACCCTCAAACAACTGGACTCGAATGGGACTCATGGCTTGGATTTCAACCATAAAGAGGAATCAGTATGCTGGGTCACATCTTCAGAGTCCTCCGGACAACTGCGCTGCGCCAGAATGAAGAAAGCAAGTGGCTTCACTAAAGAGCAGGAAGTCAAAACCGTCCAGAATCTTCACG
Seq A exon
ACGTGGATCAATTAACTTTTGACTGGCTCACCGGGAACTTTTACTTCGTGGATCAAGCAAGCGACAGGATATTTGTTTGCAACCAACTGGGAGACACCTGCGTTACAGTGGTAGACCTCGACCTGCTGAACCCCAAAGCAATCGCTCTGGATCCACTAATGGG
Seq C2 exon
GATGCTTTTCTTTACAGATTATGGGAATGTAGCCAAACTGGAGCGCTGCAACATGGACGGCACAAACAGAACTCGACTTGTGGATTACAAGGTTGAACGACCAACAGCAGTTGCACTGGATCTGGTCAAGAAGCTGGTTTATTGGGCAGATGCTTATCTGGATTACATTGAGATGGTGGATTACAATGGCAAAAACAGACACACTATCATGCAGGGATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=56.0),PF0005812=Ldl_recept_b=PU(71.4=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCAAACCCTCAAACAAC
R:
GAGTTCTGTTTGTGCCGTCCA
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]