DreEX6037529 @ danRer10
Exon Skipping
Gene
ENSDARG00000005318 | stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:ZFIN;Acc:ZDB-GENE-041114-64]
Coordinates
chr9:38240924-38247089:+
Coord C1 exon
chr9:38240924-38241019
Coord A exon
chr9:38242504-38242650
Coord C2 exon
chr9:38247020-38247089
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCTCATCGTCTCCTTTTCAGGCT
3' ss Score
9.37
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
TTGCTAGGTGCCTGTGTTGCAAACAGTGGAAAAATCTTTCACCTAGAAATCTGCTCACGGGAGTTTGCAAGTGAAGTTCGTGGAGTGTTGAACAGG
Seq A exon
GCTCACCCAAAGGTTAATGAGAAACTGAAGGCCCTGATGGCGGAATGGGCTGAAGATTTCCAGAAAGACCCGCAACTGAGTCTAATCGGTGCCACCATCAAGTCCCTGAAAGAAGAAGGAGTGACCTTTCCCACTGCAAACCCACAG
Seq C2 exon
AGCTCCAGCACAAAGCCTAGCAGCACTCCTGCCACCAGCAGAGCTTCTGCTGATGATGATCTGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005318-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.224 C2=0.750
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(23.0=100)
A:
PF0079014=VHS=PD(28.9=79.6)
C2:
PF0280915=UIM=PU(50.0=37.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGGTGCCTGTGTTGCAAA
R:
TTGGCCAGATCATCATCAGCA
Band lengths:
162-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]