RnoEX6016874 @ rn6
Exon Skipping
Gene
ENSRNOG00000027447 | Stam2
Description
signal transducing adaptor molecule 2 [Source:RGD Symbol;Acc:1311497]
Coordinates
chr3:38249910-38252896:-
Coord C1 exon
chr3:38252798-38252896
Coord A exon
chr3:38251595-38251741
Coord C2 exon
chr3:38249910-38249979
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGTTCCTTTTTCTTAAAAGGCT
3' ss Score
8.55
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTTCTTGGAGCTTGTGTGGCAAACTGTGGAAAGATATTTCATTTAGAAGTATGTTCCCGTGATTTTGCAACAGAAGTACGTGCTGTGATAAAAAATAAG
Seq A exon
GCTCATCCTAAAGTATGTGAAAAACTGAAATCTCTAATGGTAGAATGGTCAGAAGAATTCCAGAAGGACCCCCAATTTAGTCTGATATCTGCAACTATTAAGGCTATGAAAGAAGAAGGAGTTACTTTTCCTTCAGCAGGTTCCCAG
Seq C2 exon
ACTGTCTCGGCTGCTGCCAAAAACGGGGCATCACTGAACAAAAACAAAGAAGACGAGGACATAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027447-'11-7,'11-6,12-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.458
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(23.4=100)
A:
PF0079014=VHS=PD(28.5=79.6)
C2:
PF0280915=UIM=PU(50.0=37.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTGGAGCTTGTGTGGCA
R:
AGCTATGTCCTCGTCTTCTTTGT
Band lengths:
165-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]