GgaEX1055875 @ galGal3
Exon Skipping
Gene
ENSGALG00000012513 | STAM2
Description
NA
Coordinates
chr7:37039090-37042766:-
Coord C1 exon
chr7:37042671-37042766
Coord A exon
chr7:37040789-37040935
Coord C2 exon
chr7:37039090-37039159
Length
147 bp
Sequences
Splice sites
3' ss Seq
TATGCAATTTTGTCTTCTAGGCT
3' ss Score
9.39
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
CTTCTAGGAGCCTGCGTATCAAACTGTGGAAGAATATTTCACTTAGAAGTTTGTTCTCGTGATTTTGCTACTGAAGCTCGAGGTATAATAAATAAG
Seq A exon
GCTCATCCAAAAGTAAGTGAGAAGCTGAAAACTCTAATGGTGGAGTGGTCAGAAGAATTTCAGAAAGACCCACAATGTAGCTTAATATCTGCAACTATTAAATCTTTAAAAGAAGAAGGTGTCACTTTTCCTGCTGCTGGATCACAG
Seq C2 exon
GCTACCACAAATGCTGCTAAGAATGGTTCTTCATTAAGCAAAAACAAAGAGGATGAAGATATAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012513-'8-7,'8-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.082 C2=0.667
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(23.0=100)
A:
PF0079014=VHS=PD(28.9=79.6)
C2:
PF0280915=UIM=PU(50.0=37.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTAGGAGCCTGCGTATCA
R:
TCTTCATCCTCTTTGTTTTTGCTT
Band lengths:
155-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]