HsaEX6016026 @ hg19
Exon Skipping
Gene
ENSG00000115145 | STAM2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:HGNC Symbol;Acc:11358]
Coordinates
chr2:153001402-153004636:-
Coord C1 exon
chr2:153004538-153004636
Coord A exon
chr2:153003676-153003822
Coord C2 exon
chr2:153001402-153001471
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCTTTCCTTTTCCTTAAAAGGCA
3' ss Score
9.22
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTTCTTGGGGCTTGTGTGGCAAACTGTGGAAAGATATTTCATTTAGAAGTATGTTCCCGTGATTTTGCAACAGAAGTACGTGCTGTGATTAAAAATAAG
Seq A exon
GCACATCCTAAAGTATGTGAAAAACTGAAATCTTTAATGGTGGAGTGGTCAGAAGAATTTCAGAAGGACCCTCAGTTTAGTCTGATATCTGCAACTATTAAATCTATGAAAGAAGAAGGAATTACTTTTCCTCCAGCAGGTTCTCAG
Seq C2 exon
ACTGTCTCAGCTGCTGCCAAGAATGGTACGTCATCGAACAAAAACAAAGAGGATGAAGACATAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115145-'4-8,'4-5,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.102 C2=0.750
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(23.4=100)
A:
PF0079014=VHS=PD(28.5=79.6)
C2:
PF0280915=UIM=PU(50.0=37.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGGGCTTGTGTGGCAAA
R:
AGCTATGTCTTCATCCTCTTTGT
Band lengths:
162-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)