DreEX6038520 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48967156-48968207:+
Coord C1 exon
chr9:48967156-48967282
Coord A exon
chr9:48967911-48968018
Coord C2 exon
chr9:48968100-48968207
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTATTTATTATTAGGAT
3' ss Score
8.72
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
TCTGAGCAGTCTGGTGAAGTCTGGAGATACGGGGAATGGAGTGTCCTTTCATTCGGGTGATAATGTGACCATGGATCTGGAGCCGCAGACTCTCGGGGTGTCCTTCATTGACAGGGCTATGCAGCTG
Seq A exon
GATGAGAATTTTGCAGACCCTGGACGACAGCCAATTACGTTTGAAAATCCTCTGTACTCGACTGCAGCCGCTCCGTCCAGTGATCCTGCAGTAATACACGCTACACAG
Seq C2 exon
GTCACTGTGAACGTCAGTGCGGACCAGGTGGACAATAACTTCTCAAACCCCACATATCAGCAGGCAGTGGAGGTGAAGAGCGAACAAGTAGAGGAGAAAAACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-'80-91,'80-90,81-91=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.579 C2=0.945
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGCAGTCTGGTGAAGTCT
R:
TGTGTGTTTTTCTCCTCTACTTGT
Band lengths:
234-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]