BtaEX0020545 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004555 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:27071278-27077991:+
Coord C1 exon
chr2:27071278-27071404
Coord A exon
chr2:27072657-27072764
Coord C2 exon
chr2:27077920-27077991
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTTCCTTCATCAGAAT
3' ss Score
9.19
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
CTTAAGCCATCTCAAATCCTCTGAAAATGGAAATGGGGTGACCTTCAGATCAGGGGATGATGTGAACATGGATATTGGAGTAACTGGTTTTGGGCCCGAGTCTGCTATTGACAGATCGCTGGCGATG
Seq A exon
AATGAGCATTTTGCCGCAGACTTCGGGAAGTCGCCCATAATATTTGAGAACCCGACATACTCCTCCAAGGACACTGCTATCACAGTGGCTCAGCCAACAACAGCCCCG
Seq C2 exon
CCAACAAAATGGAATATCTTCAAACGAAAACCGAAACAAAATACCAACTTTGAAAATCCATTCTATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004555_MULTIEX1-1/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.333 C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCATCTCAAATCCTCTGAA
R:
TTCAAAGTTGGTATTTTGTTTCGGT
Band lengths:
178-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development