HsaEX6016588 @ hg38
Exon Skipping
Gene
ENSG00000081479 | LRP2
Description
LDL receptor related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:169132574-169137750:-
Coord C1 exon
chr2:169137650-169137750
Coord A exon
chr2:169137392-169137493
Coord C2 exon
chr2:169132574-169132681
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGTCTCTGCCATCAGAGT
3' ss Score
9.91
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TTTCCTTGAGTTGGTAAATTAGTGCATGTTATGTTACTTTGCATAATAATTTGCCATATGGAGGTCTTGTGTTTTGCTGGCCTTTTTTTTTTTTTTTTTTT
Seq A exon
AGTGAAGACTTTGTCATGGAAATGGGGAAGCAGCCCATAATATTTGAAAACCCAATGTACTCAGCCAGAGACAGTGCTGTCAAAGTGGTTCAGCCAATCCAG
Seq C2 exon
GTGACTGTATCTGAAAATGTGGATAATAAGAATTATGGAAGTCCCATAAACCCTTCTGAGATAGTTCCAGAGACAAACCCAACTTCACCAGCTGCTGATGGAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000081479-'99-102,'99-101,100-102
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.059 C2=0.944
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGAGTTGGTAAATTAGTGCA
R:
CTGAGTTCCATCAGCAGCTGG
Band lengths:
207-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains