MmuEX0026877 @ mm10
Exon Skipping
Gene
ENSMUSG00000027070 | Lrp2
Description
low density lipoprotein receptor-related protein 2 [Source:MGI Symbol;Acc:MGI:95794]
Coordinates
chr2:69428593-69431204:-
Coord C1 exon
chr2:69431075-69431204
Coord A exon
chr2:69430263-69430364
Coord C2 exon
chr2:69428593-69428721
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCCTCCCGCCAGAAT
3' ss Score
10.54
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTTAAGCAGCCTTGCCAAACCCTCTGAAAATGGAAACGGGGTGACTTTCAGATCAGGGGCTGATGTGAACATGGACATCGGTGTGTCTCCTTTTGGCCCTGAGACAATTATTGACAGATCCATGGCAATG
Seq A exon
AATGAACAATTCGTCATGGAGGTAGGCAAGCAGCCTGTGATATTTGAAAACCCAATGTATGCAGCCAAAGACAGTACTTCCAAAGTGGGCCTGGCAGTGCAG
Seq C2 exon
GGACCGTCAGTAAGCTCACAGGTGACTGTACCAGAAAATGTGGAAAACCAGAACTATGGAAGGTCCATAGATCCTTCTGAGATAGTTCCAGAGCCAAAGCCAGCCTCCCCTGGAGCTGATGAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027070_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.176 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGCCAAACCCTCTGAAA
R:
AGTTTCATCAGCTCCAGGGGA
Band lengths:
248-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types