GgaEX1033928 @ galGal4
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr7:18335525-18338018:+
Coord C1 exon
chr7:18335525-18335654
Coord A exon
chr7:18337700-18337819
Coord C2 exon
chr7:18337911-18338018
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTCCTCTGAAGAAT
3' ss Score
8.24
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTTAAGCAGTCTTGTAAAATCAGCTGAAAATGGCAATGGGGTAACTTTCCGATCTGGTGCAGATGTAAGCATGGACATAGGAGGTTCTGTTTTTGAAGGAGACTCTGCTATAGACAGAGCAATGCAAATG
Seq A exon
AATGAAAACTTTGCAGTAGAGTCAGGGAAACAGCCAATCACATTTGAAAATCCAATGTATGCAACCAGAGATAGTGGAGCTGGTGGAACCAGTGAAGTTACAGTCATTCAACCAACACAG
Seq C2 exon
GTAACAGGAGCTGGTAGTGTGGAAAATGAAAATTTTGAAAATCCTGTGTATGCCTCTGAAGTATCTCCTGGGCCAAAAGAACCTCCTCCACGTACAGACACACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858_MULTIEX2-2/5=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.750 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000017651fB9036
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTCTTGTAAAATCAGCTGA
R:
CTGAGGTGTGTCTGTACGTGG
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]