DreEX6038622 @ danRer10
Exon Skipping
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50148095-50150469:-
Coord C1 exon
chr9:50150371-50150469
Coord A exon
chr9:50149958-50150150
Coord C2 exon
chr9:50148095-50148192
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTTGTGGGGTCTCTCTGCAGTGT
3' ss Score
8.3
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TCTGTAAATCAGCTATCAAATCTGATAAGCAATCTGGACATTCAAGAACCGAGCAATCCGGAGCTCTTCTACAGGATGTCTTTGGCGTTCACTCGAGTG
Seq A exon
TGTGGAAGAGCTGAGAAGATTCTCCAGCACACTCACCGGATGGTGGAGCGGGCATTTGCACAGGCTTCCAGTGACTCTGAACTAGCCACAGAGATGGGCTACCAGCTGATCCTCATGGGCAGAGTCAAAGAGGCCATGAAGTGGTACAAAACAGCAATGACTCTTGATGAAAGCAGCGTCTCCGCTTTGATAG
Seq C2 exon
GTATCATCAGGTGTCAGCTAATAGAAGGACACATAGAAGATGCAGAACAGCAACTGGAGTTTCTCACAGAGATCCAGCAGTCCATTGGCAAATCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF145591=TPR_19=PU(38.2=44.6)
C2:
PF145591=TPR_19=FE(42.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATCAAATCTGATAAGCAATCTGG
R:
CCCTGATTTGCCAATGGACTG
Band lengths:
186-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]