MmuEX6101725 @ mm9
Exon Skipping
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66073630-66075942:-
Coord C1 exon
chr2:66075844-66075942
Coord A exon
chr2:66074278-66074470
Coord C2 exon
chr2:66073630-66073727
Length
193 bp
Sequences
Splice sites
3' ss Seq
GTTTGGTTTCTCTTTCACAGTGT
3' ss Score
9.23
5' ss Seq
CCGGTACGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
GCTGCTACCAAGCTGGAAAATTTAGGAAATGCATTGGATGTCATGGAACCACAGAATGCTCAACTTTTTTATAAGATTACACTAGCCTTCAGCAGAACG
Seq A exon
TGTGGACGTAATCAACTCATTCTCCAGAAAGTTCAAAGTTTCCTAGAAAAAGCATTTAGTTTAACTCCCCAGCAAGCAGAAATTGCTACAGAGCTCGGCTACCAAATGATTCTCCAAGGCAAGGTCAAGGAGGCCTGGAAGTGGTACAGGACCGCCATGACGCTGAATGAGAGCAACATCTCTGCTGTCACCG
Seq C2 exon
GACTTATCCGATGTCAGTTAATAGAGGGGCAGTTGCAAGATGCAGACCAGCAGTTGGAGTTCTTCAGTGAATTCCAGCAGTCAATGGGGAAATCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(63.1=63.1)
C2:
PF134141=TPR_11=PD(35.4=69.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCAAGCTGGAAAATTTAGGA
R:
CGCAGATTTCCCCATTGACTG
Band lengths:
194-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: