GgaEX6042511 @ galGal4
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19160932-19164094:+
Coord C1 exon
chr7:19160932-19161030
Coord A exon
chr7:19161654-19161846
Coord C2 exon
chr7:19163997-19164094
Length
193 bp
Sequences
Splice sites
3' ss Seq
AGATTATTCTTACCTTTTAGTGT
3' ss Score
7.61
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GCTTCGGCAAGACTAAGTGACCTCATTAAAGCATTGGACAGGTTGGAGCCGCGTAATTCACAGCTCTTCTATAAAATGGCTTTAGCTTTCAGTAGAACA
Seq A exon
TGTGGCCGGAACCAACTCATCCTTCAACATACACAAACATTAGTTGAAAGAGCATTTAATTTGGATTCTGACAATGCAGAATTTGCTACGGAGCTTGGCTACCAAATGATTTTACAAGGGAAAGTGAAAGAAGCTTTAAAATGGTATCAGACTGCTATGACACTTGATGAGACAAGCGTTTCTGCCCTAACTG
Seq C2 exon
GAATTATTCGTTGTCAGCTAATACAAGGGCAGCTGGAAGATGCAGAACAGCAGCTGGAGTTTCTTAATGAAATCCAACAGTCCATTGGAAAATCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF145591=TPR_19=PU(50.0=44.6)
C2:
PF145591=TPR_19=PD(48.3=84.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCAAGACTAAGTGACCTCA
R:
CCCAGATTTTCCAATGGACTGT
Band lengths:
194-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]