DreEX6038711 @ danRer10
Exon Skipping
Gene
ENSDARG00000060303 | slc4a10b
Description
solute carrier family 4, sodium bicarbonate transporter, member 10b [Source:ZFIN;Acc:ZDB-GENE-081105-62]
Coordinates
chr9:51758481-51764228:-
Coord C1 exon
chr9:51764164-51764228
Coord A exon
chr9:51761447-51761548
Coord C2 exon
chr9:51758481-51758517
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTGAATATTTTCAGAGA
3' ss Score
6.22
5' ss Seq
AAGGTTCTT
5' ss Score
3.87
Exon sequences
Seq C1 exon
GAGGAGCAAAGTATTTTGGCAGAGGAAGAAGGAATCGTTCAAGTGCCATTGGAGGGACATTACAA
Seq A exon
AGATGATCCTTCTACTGTCAACATTACTGATGAGATGTCCAAAGGCTCCTTTGGAAGTACTTGGAATACCATCAACTCTAAAAATGATCCAAACACCAAAAG
Seq C2 exon
CCCGGTTCCCTGAGCTGAAAGCTGATGATCCCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060303-'22-25,'22-23,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.514 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAAAGTATTTTGGCAGAGG
R:
TTGGGGATCATCAGCTTTCAGC
Band lengths:
98-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]