BtaEX0033322 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34585094-34588759:-
Coord C1 exon
chr2:34588692-34588759
Coord A exon
chr2:34586022-34586138
Coord C2 exon
chr2:34585094-34585194
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGGGTAAACTCCTATCTAGAGA
3' ss Score
1.46
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GAAGAACAAAGTATGCTAGCTATGGAAGATGAAGGCACAGTACAGCTCCCACTGGAAGGGCACTATAG
Seq A exon
AGATGATCCATCTGTGATCAATATTTCTGATGAAATGTCAAAGACTGCCTTGTGGAGGAACCTTCTGATTACTGCCGATAACTCAAAAGATAAGGAGTCAAGCTTTCCTTCTAAAAG
Seq C2 exon
CTCCCCTTCCTAATCACTCTAGAAGCTGATTTCCCAAAGGTAAGACCCTTTCCCTCAAACCTATTCCTTGGTTGCATTTCCTTTTGTTAAGTGGTGTCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-'27-29,'27-28,28-29
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.175 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAAAGTATGCTAGCTATGGA
R:
ACACCACTTAACAAAAGGAAATGCA
Band lengths:
163-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development