DreEX6090808 @ danRer10
Exon Skipping
Gene
ENSDARG00000063133 | slc4a10a
Description
solute carrier family 4, sodium bicarbonate transporter, member 10a [Source:ZFIN;Acc:ZDB-GENE-100215-3]
Coordinates
chr11:10685769-10703348:-
Coord C1 exon
chr11:10703284-10703348
Coord A exon
chr11:10702019-10702129
Coord C2 exon
chr11:10685769-10689068
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTGTGTTTCTTAAGGGA
3' ss Score
8.12
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GAGAATCAGTGTGTCTTGATTGAGGATGAAGGGATTGTACAAGTACCCCTAGAAGGACATTATAA
Seq A exon
GGACGATCCATCCACAGTCAACATCACAGATGAAATGACAAAGACATCTTTTGGAAATGTCTGGAAAGGCCTAAACCCTGAAAGCGCCAACAAAGAAGAAAGCTCAAAAAG
Seq C2 exon
CTCAACAGTTATGGGTGCCACTGGACAAGAGCGAAGCGATGAAGACAAAGAGAACGATTTGGATAGAGAGACGAGTTTGTGAGTTGATGTATTTGGAAACTCTCTGTATCGTGCCACACTACAAGCACTACTTTATGCTTCTGTTCTGTAGGTCTGTGTGTGCCAGTCTGTGCCCAGGCACTTGTTGTATTTACATGTTATATTTACATGTTTTTATATATGTTTGAGCGCGTGTGTGGAGATGAGTGCGACTGAATTTGTATGATTGAATCTGCCACCCACAAGGACGATTGTTGGGTTGCGTTTTCCAGTCTAACGGTCCAATTGTAGTTTCACCTGTAGGTAAATAAAATAAGGTTACTTTTGTTTTCAGCCAGGTAGACCGTATTTTGTATGTTTTATAATTTTTTTGACTGTAGATCCTATTGAAATCTCTCGTCTTATAGCCTGTACGTGTTTTTAATATACAATTCATTTTTTTTATTACACATAAATGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063133-'32-37,'32-34,34-37=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.421 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCTTGATTGAGGATGAAGGG
R:
AAATACAACAAGTGCCTGGGC
Band lengths:
248-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]