MmuEX6101571 @ mm10
Exon Skipping
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:62313282-62317514:+
Coord C1 exon
chr2:62313282-62313349
Coord A exon
chr2:62316565-62316681
Coord C2 exon
chr2:62317476-62317514
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGTGTAAACTCCTTTCTAGAGA
3' ss Score
5.56
5' ss Seq
AAGGTTGGA
5' ss Score
5.64
Exon sequences
Seq C1 exon
GAAGAACAAAGTATGCTAGCCATGGAGGACGAGGGCACAGTACAACTCCCACTGGAGGGACACTACAG
Seq A exon
AGACGACCCGTCTGTGATCAATATTTCTGATGAAATGTCAAAGACTGCCATGTGGGGGAACCTTCTAGTTACTGCTGACAACTCAAAAGAAAAGGAGTCACGCTTTCCTTCTAAAAG
Seq C2 exon
CTCCCCTTCCTAATCACTCTAGAAGCTGATTCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904-'38-63,'38-55,40-63=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.315 A=0.275 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACAAAGTATGCTAGCCATGGA
R:
CTTTGGGGAATCAGCTTCTAGAGT
Band lengths:
106-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types