GgaEX6042599 @ galGal4
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20678066-20686579:-
Coord C1 exon
chr7:20686512-20686579
Coord A exon
chr7:20684664-20684780
Coord C2 exon
chr7:20678066-20680355
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTACTTTTATTCTTGCCTAGAGA
3' ss Score
7.32
5' ss Seq
AAGGTTTTA
5' ss Score
0.84
Exon sequences
Seq C1 exon
GAAGAACAAAGTATGTTAGCAATGGAGGAGGAAGGGACTGTTCAGTTGCCGCTAGAAGGACATTACAG
Seq A exon
AGATGATCCATCTGTGATAAACATTTCTGATGAGATGGCAAAAACTGCTGTGTGGAAGACGCTGTTGATATCCTCGGAGAATGCAAAAGATAAGGAGTCAAGCTTTCCTTCTAAAAG
Seq C2 exon
TGCTGAAATCAGACAAGAGAAGAAAGCTGACTCAGGGAAAGGTGTCGACCGAGAGACTTGTCTGTGACTTGTTCTAAACTTATTTTTTTTTTTTTTACAAATGAATGAAAGGAGTGCCACAGCCACTAAATATAACTGATTTGATCTTGTAACTTTTGTCTTTCATCTCAAACTAGCACAGGTAATGTAATGCAATATTTGTCTCTTTACCCTTTGTCTAAATGTCTACATTGTCTGCTATCTGTGCAAAAGTCTGCAGTAGCCAATGCCAAAAATCTTCATTTCCTTTGCTGGCATTGGCCATTTATCAGTATTCATATCATGAATTTAACAAGCAAAGTTTCTTTCAAATTCAACTTACCTGTTAATAGGTTTGTACTGTATTTTGCTACTTTTCCTGCTTGATAAAACTTAATCTTCACTCAAGGTGAACTTGAAACAGTTGTTCCTTTTTTTTTTTTTAATCATTTTACTGGAGGAAGTGATTTTAGGAGACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-'29-41,'29-31,31-41=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.181 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATGGAGGAGGAAGGGAC
R:
TGCATTACATTACCTGTGCTAGT
Band lengths:
245-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]