HsaEX6016225 @ hg19
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:13811]
Coordinates
chr2:162830759-162834270:+
Coord C1 exon
chr2:162830759-162830826
Coord A exon
chr2:162833270-162833386
Coord C2 exon
chr2:162834232-162834270
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGGGGAAACTCCTGTCTAGAGA
3' ss Score
0.2
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GAAGAACAAAGTATGCTAGCTATGGAAGATGAGGGCACAGTACAACTCCCATTGGAAGGGCACTATAG
Seq A exon
AGATGATCCATCTGTGATCAATATATCTGATGAAATGTCAAAGACTGCCTTGTGGAGGAACCTTCTGATTACTGCCGATAACTCAAAAGATAAGGAGTCAAGCTTTCCTTCCAAAAG
Seq C2 exon
CTCCCCTTCCTAATCACTCTAGAAGCTGATTCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290-'34-41,'34-39,35-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.207 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAACAAAGTATGCTAGCTATGGA
R:
TTTGGGGAATCAGCTTCTAGAGTG
Band lengths:
106-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)