RnoEX0082786 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48276240-48287910:+
Coord C1 exon
chr3:48276240-48276307
Coord A exon
chr3:48278991-48279107
Coord C2 exon
chr3:48285893-48287910
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGGGTAAACTCCTATCTAGAGA
3' ss Score
1.46
5' ss Seq
AAGGTTGGA
5' ss Score
5.64
Exon sequences
Seq C1 exon
GAAGAACAAAGTATGCTAGCCATGGAGGACGAGGGCACAGTACAACTCCCACTGGAGGGACACTACAG
Seq A exon
AGACGACCCATCTGTGATCAATATTTCTGATGAAATGTCAAAGACTGCCATGTGGGGGAACCTTCTAGTCACTGCTGACAACTCAAAAGAAAAGGAGTCACGCTTTCCTTCTAAAAG
Seq C2 exon
CATTGAAAGCCGAAAGGAGAAGAAAGCTGACTCAGGGAAAGGCGTTGACAGGGAGACTTGTCTATGACTTGATCTTCAATTTATTTTTTACATATATATGAGAAGAGTGTCACAATTATTAATAAAACTGCTTTGATCATGTCATTGTAAGCCCTGTCTCCCATCCCAAATCCACCTTCATAAGTAAGTAGTGCCACCCTTCGTTCTGTTTGTGTTCAGCCTCTGAGCAGGTCAACACCCTTGTGAGCAGATCCATAGCTAAGGCAGGAGTCTCCATGTTACTGCCGTAGGACATCCGCCAACACACAGTTCTCATTGTTGGCATTAGGAGAGCAAAGCTTTCTTTAAAATATAAGTCATATTTGCCTAGTTTGTATTTTCCTACCTTAGTAACCTGAAGATGCCTGATAATTTTATTCAGAAGAGTTTTGAAAGGTCGTATTACTTTTTCATTTTTATGGCTTAGCATTCGTGACTGGTTTTGAAAGACCCAAATAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=0.261 C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGTACAACTCCCACTGG
R:
CAGAACGAAGGGTGGCACTAC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]