DreEX6040412 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19423332-19425741:-
Coord C1 exon
chr16:19425559-19425741
Coord A exon
chr16:19423585-19423686
Coord C2 exon
chr16:19423332-19423466
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATACGTTTTCTTTTGCTCAGGTT
3' ss Score
7.84
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTGGATGACTTTCTGCAGGCTCTTCTTTCTTACGATAAAGAGCACATCCCTCAGTCGTGTCTGAATGTGGTAAAGCAAGAATACCTTAAAAATCCAGAGTTTCATCCCGATCACGTCCGGACCAAGTCCTATGCAGCTGCAGGTCTCTGTGCCTGGATCATCAACATTGTGCGCTACTATGAG
Seq A exon
GTTTATTGTGAGGTTGCACCGAAACGTCTGGCTCTGGCACAAGCCAACAGTGAACTAGAAACTGCTACCACAAAACTCCTCAGCGTTCGAAGGAAACTGGAA
Seq C2 exon
GATCTGGACCGGCACCTGCAAAGCCTAACAGCTCAGTTTGAGAGGGCAGCGACTGAGAAACTGCGCTGCCAGGAGGAAGTGACTCGCACCAGCCAGACTATTAAACTGGCCAATCGGCTGGTGGGAGGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.4=100)
A:
PF127772=MT=FE(9.6=100)
C2:
PF127772=MT=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCACATCCCTCAGTCGT
R:
AATAGTCTGGCTGGTGCGAGT
Band lengths:
248-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]