RnoEX0028442 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145865999-145875673:-
Coord C1 exon
chr6:145875530-145875673
Coord A exon
chr6:145872291-145872392
Coord C2 exon
chr6:145865999-145866133
Length
102 bp
Sequences
Splice sites
3' ss Seq
AACCCCATGTGGATTTTCAGGTT
3' ss Score
6.24
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTAAACCTCACAGAACTGAAAACCTTCCCCAACCCCCCAAATGCTGTTACCAATGTAACTGCAGCTGTGATGGTCCTTCTGGCCCCCCGAGGCAGAGTGCCAAAAGACAGAAGTTGGAAAGCAGCCAGAATCTTCATGGGAAAG
Seq A exon
GTTTATTGTGACGTGGAGCCCAAACGTCAGGCATTGGCCCAAACAAACTTAGACCTGGCTGCAGCTACTGAAAAGTTAGAGGCCGTCAGGAGGAAGCTCGTG
Seq C2 exon
GATCTGGATCATAATCTGAGAAGACTTACAGCTTCATTTGAAAAGGCAACAGCTGAGAAGGTCCGGTGTCAGGAAGAAGTGAATCAAACCAATAAGACGATTGACTTGGCCAACAGACTAGTCAGTGAACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.6=100)
A:
PF127772=MT=FE(9.6=100),PF060097=Laminin_II=PU(21.8=55.9)
C2:
PF127772=MT=FE(12.8=100),PF060097=Laminin_II=FE(50.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAAACCTTCCCCAACCCC
R:
TGTTGGCCAAGTCAATCGTCT
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]