MmuEX6083447 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119205005-119213547:-
Coord C1 exon
chr12:119213365-119213547
Coord A exon
chr12:119210788-119210889
Coord C2 exon
chr12:119205005-119205139
Length
102 bp
Sequences
Splice sites
3' ss Seq
AAGCCCATGTGGATTTTCAGGTT
3' ss Score
4.2
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTTGATGACTTCCTACAAGCGTTAATTAACTACGATAAAGAGCACATTCCAGAGAACTGTCTAAAAGTAGTCAATGAACAATATTTGAAAGATCCAGAGTTTAATCCAAACCTGATTCGGACCAAATCTTTTGCAGCGGCTGGTCTCTGTGCCTGGGTCATCAACATCATTAGATTTTATGAG
Seq A exon
GTTTATTGTGATGTGGAGCCCAAACGCCAGGCATTGGCCCAAACAAACTTGGACCTGGCTGCAGCTACTGAAAAGCTAGAGGCTGTAAGGAGGAAACTTGTG
Seq C2 exon
GATCTGGATCATAATCTGAGCAGACTTACAGCTTCATTTGAAAAGGCAACAGCTGAGAAGGTCCGGTGTCAGGAAGAAGTGAATCAAACCAATAAGACGATCGACCTAGCCAACAAACTTGTCAGTGAACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'55-64,'55-60,63-64=AN
Average complexity
A_C3
Mappability confidence:
94%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.4=100)
A:
PF127772=MT=FE(9.6=100),PF060097=Laminin_II=PU(21.8=55.9)
C2:
PF127772=MT=FE(12.8=100),PF060097=Laminin_II=FE(50.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCTCCTCCTTAATGGGA
R:
TCTTAGTGGTGTTCCTGCCGA
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: