GgaEX1020251 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1121777-1128756:+
Coord C1 exon
chr18:1121777-1122037
Coord A exon
chr18:1125964-1126389
Coord C2 exon
chr18:1128637-1128756
Length
426 bp
Sequences
Splice sites
3' ss Seq
ACTTCATTTTCCCTTTTCAGAAG
3' ss Score
10.97
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTGGATGACCTGAAGGCCAAGCTGGCAGCCCAGGAAGTGGAGCTAAAGCAGAAGAATGAGGATGCCGATAAGCTGATCCAGGTGGTGGGTGTGGAGACAGAGAAAGTGAGCAGGGAGAAAGCAGCTGCTGATGAAGAGGAGCAGAAAGTGGCACTCATCACCCAGGAGGTCCAGCAGAAACAGAAGGACTGTGAGGAGGACCTGGCCAAAGCTGAGCCTGCCCTGGCAGCTGCCCAGGCTGCTCTGAACACCCTCAACAAG
Seq A exon
AAGAACCTGACGGAACTGAAATCCTTTGGGTCACCACCTCCGGCTGTCAGCAATGTCACCGCTGCTGTGATGGTGCTGATGGCCCCGGGAGGGAAGATTCCCAAGGACAGGAGCTGGAAGGCAGCGAGAGCCACCATGGCCAGGGTGGATGCGTTCCTGGACTCCTTGATCAAGTTCGACAAGGAGAACATCCACGAGAACTGCCTCAAAGCCCTCCAGCCTTATTTAGAGGATCCCAAGTTTAAACCCGAATTCGTAACCACCAAGTCCTACGCGGCAGCCGGCCTCTGCTCGTGGGTGGTGAATATCGTGCGCTTCCACGAGGCCTACTGCGACGTGGAGCCCAAGCGGCAGGCCCTGAGCAGAGCCAACGCTGAGCTGGCGGCTGCACAGGACAAGCTGGCCAGCATCAAGGCCAAAATTGCA
Seq C2 exon
CGCCTCAATGAGAACCTGGGAAAGCTGACAGCCAAGTTTGAGAAGGCCACTTCTGACAAACTCAAGTGTCAGCAAGAAGCTGAAGCTACAGCATGTACCATCACTCTTGCAAACTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'44-47,'44-45,45-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(25.0=100)
A:
PF127772=MT=FE(41.0=100)
C2:
PF127772=MT=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAGTGGAGCTAAAGCAGA
R:
GCCAGTTTGCAAGAGTGATGG
Band lengths:
349-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]