HsaEX6021129 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11834638-11869253:+
Coord C1 exon
chr17:11834638-11834898
Coord A exon
chr17:11854003-11854428
Coord C2 exon
chr17:11869134-11869253
Length
426 bp
Sequences
Splice sites
3' ss Seq
ACCTCCTTCTCTTTTCCCAGACC
3' ss Score
11.06
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTGGATGATCTGAAAGCAAAGCTGGCTGCCCAGGAAGTAGAGCTGAAGCAGAAAAATGAAGATGCAGACAAACTGATTCAGGTCGTGGGTGTGGAGACTGACAAAGTGAGCAGAGAGAAAGCCATGGCAGATGAAGAGGAGCAGAAGGTGGCCGTCATCATGCTAGAGGTGAAACAGAAGCAGAAGGACTGTGAGGAGGACCTGGCAAAGGCTGAGCCAGCACTCACAGCAGCGCAGGCAGCTCTCAACACCCTGAACAAG
Seq A exon
ACCAACCTGACAGAGCTGAAGTCATTTGGCTCTCCGCCTCTGGCCGTCAGCAATGTCAGCGCTGCGGTGATGGTACTGATGGCTCCCAGGGGTAGGGTGCCCAAGGACCGGAGCTGGAAGGCTGCTAAGGTCACCATGGCCAAAGTGGATGGCTTCCTGGACTCGCTAATAAACTTCAACAAAGAGAACATTCACGAGAACTGCCTCAAAGCCATCAGGCCGTATCTGCAAGACCCCGAGTTCAATCCTGAGTTTGTGGCCACCAAATCCTATGCGGCTGCAGGCCTCTGCTCCTGGGTCATCAATATTGTGAGATTTTATGAGGTGTTCTGTGATGTGGAACCCAAGCGCCAGGCACTGAACAAAGCCACCGCGGACCTCACAGCTGCCCAGGAGAAGCTGGCTGCCATCAAAGCCAAGATCGCT
Seq C2 exon
CACCTTAATGAAAACCTGGCAAAGCTCACAGCCAGGTTTGAGAAAGCAACAGCAGACAAACTCAAATGTCAGCAAGAAGCCGAAGTGACCGCAGTCACCATCTCCCTTGCCAACCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'91-85,'91-83,95-85=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(25.0=100)
A:
PF127772=MT=FE(41.0=100)
C2:
PF127772=MT=FE(22.8=100),PF097314=Mitofilin=FE(47.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGGAAGTAGAGCTGAA
R:
GTTGGCAAGGGAGATGGTGAC
Band lengths:
349-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains