MmuEX6086228 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65918724-65947729:-
Coord C1 exon
chr11:65947469-65947729
Coord A exon
chr11:65927584-65928009
Coord C2 exon
chr11:65918724-65918843
Length
426 bp
Sequences
Splice sites
3' ss Seq
ACCTCTTCCTCTTTTCTCAGACC
3' ss Score
11.2
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTGGATGATCTGAAAGCGAAGCTTGCCACCCAGGAAGTGGAGCTGAGGCACAAGAATGAAGATACAGACAAGCTGATTCAGGTGGTGGGTGTGGAGACCAGCAAAGTGAGCAGAGAGAAAGCCATTGCTGACGAGGAGGAGCAGAAGGTGGCCCTGATCATGCTGGAGGTGCAGCAGAAACAGAAAGACTGTGAAGAGGACCTGGCTAAGGCCGAGCCAGCCCTGACCGCAGCGCAGGCGGCCCTCAACACTCTCAACAAG
Seq A exon
ACCAACCTGACAGAGCTGAAGTCATTTGGTTCCCCACCTCTGGCTGTCAGCAATGTCAGCGCCGCGGTGATGGTTCTCATGGCCCCAGGGGGCAAGGTGCCCAAGGACCGCAGCTGGAAGGCTGCCAAAATCACCATGGCCAAGGTGGACAGCTTCCTGGATTCCCTAATCCACTTCGACAAGGAGAACATTCATGAGAATTGCCTCAAAGCCATCAGGCCATACCTGCAAGATCCTGCATTCAACCCAGAGTTTGTGGCCACCAAGTCCTATGCAGCTGCAGGCCTCTGCTCTTGGGTAATCAATATTGTGAGGTTCTATGAGGTCTTCTGTGATGTGGAACCAAAGCGCCAGGCTTTGAACAAAGCCACCTCAGACCTCACAACTGCCCAAGAGAAGCTGGCAGCCATCAAAGCCAAGATCACA
Seq C2 exon
CACCTTAATGAAAACCTGGCGAAGCTCACCACCAAGTTTGAGAAAGCAACAGCAGAGAAGCTCAAGTGTCAGCAAGAAGCTGAACTGACCGCAGGCACCATTTCGCTTGCAAACCGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'57-66,'57-64,58-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(25.0=100)
A:
PF127772=MT=FE(41.0=100)
C2:
PF127772=MT=FE(22.7=100),PF097314=Mitofilin=FE(48.1=100),PF083176=Spc7=PD(48.6=85.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGAGCTGAGGCACAAG
R:
GTTTGCAAGCGAAATGGTGCC
Band lengths:
342-768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types