RnoEX0028656 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52424290-52454355:-
Coord C1 exon
chr10:52454095-52454355
Coord A exon
chr10:52433623-52434048
Coord C2 exon
chr10:52424290-52424409
Length
426 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCTTCTCTTCTCAGACC
3' ss Score
11.31
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
GTGGATGATCTGAAAGCCAAGCTTGCCACCCAGGAAGTGGAGCTGAGACAGAAGAATGAAGATACAGACAAGCTGATTCAGGTGGTGGGTGTGGAGACCAGCAAAGTGAGCAGAGAGAAAGCCATTGCAGACGAAGAGGAGCAGAAGGTGGCACTGATCATGCTGGAGGTGCAGCAGAAACAGAAAGACTGTGAGGAGGACCTGGCTAAAGCTGAACCAGCCCTTACCGCAGCCCAGGCAGCCCTCAACACACTCAACAAG
Seq A exon
ACCAACCTGACAGAGCTGAAGTCATTTGGTTCGCCACCTCTGGCTGTCAGCAATGTCAGTGCAGCAGTGATGGTCCTCATGGCCCCAGGGGGGAAGGTGCCCAAGGACCGCAGCTGGAAGGCTGCCAAGATCACCATGACCAAGGTGGACAGCTTCCTGGATTCCCTAATCCACTTCGACAAGGAGAACATTCATGAGAATTGCCTCAAAGCCATCAGGCCATACCTGCAAGATCCTGCTTTCAACCCAGAGTTTGTGGCCACCAAGTCCTACGCAGCCGCAGGCCTCTGCTCTTGGGTCATAAACATTGTGAGGTTCTACGAGGTCTTCTGTGATGTGGAACCAAAGCGCCAAGCTTTGAACAAAGCCACCTCAGACCTCACAGCTGCCCAGGAGAAGCTGGCAGCCATCAAAGCCAAGATCACC
Seq C2 exon
CACCTTAATGAAAACCTGGCAAAGCTCACCACCAAGTTTGAGAAAGCAACAGCAGAGAAACTCAAGTGTCAGCAAGAAGCAGAAGTGACTGCGGGCACCATTTCCCTTGCAAACCGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(25.0=100)
A:
PF127772=MT=FE(41.0=100)
C2:
PF127772=MT=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTGGAGCTGAGACAGA
R:
ACGGTTTGCAAGGGAAATGGT
Band lengths:
347-773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]