BtaEX6087248 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31164824-31183163:+
Coord C1 exon
chr19:31164824-31165084
Coord A exon
chr19:31175252-31175677
Coord C2 exon
chr19:31183044-31183163
Length
426 bp
Sequences
Splice sites
3' ss Seq
AATGTGCCTCTCTCTTGCAGACC
3' ss Score
12.68
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGGATGAGCTGAAAGCCAAGCTGGCCACCCAGGAAGTGGAGCTGAGGCAGAAGAATGAAGATGCCGACAAGCTGATTCAGGTGGTGGGCGTGGAGTCGGACAAGGTGAGCAGAGAGAAAGCCATTGCCGATGAGGAGGAGCGGAAGGTGGCCCTCATCATGCTGGAGGTGCAGCAGAAGCAAAAGGACTGTGAAGAAGACCTGGCCAAGGCAGAGCCAGCGCTCACAGCAGCCCAGGCGGCCCTCAACACCCTCAACAAG
Seq A exon
ACCAATCTGACCGAGCTGAAGTCCTTCGGTTCCCCGCCGCCGGCGGTGAGCAATGTCAGCGCAGCGGTGATGGTGCTCATAGCCCCCAGGGGCAAGGTGCCCAAGGACCGCAGCTGGAAGGCCGCCAAGGTCACCATGGCCAAGGTGGACGGTTTCCTGGACTCCCTCGTCCACTTTGATAAGGAGAACATTCACGAGAACTGCCTCAAGGCCATCAGGCCATATCTGCAGGACCCCGAGTTCAATCCGGAGTTCGTGGCCACCAAGTCTTACGCAGCCGCAGGCCTCTGTTCTTGGGTCATAAACATCGTGAAGTTTCACGAGGTGTTCTGTGATGTGGAACCCAAGCGCCAAGCACTGAGCAGGGCCACCTCGGACCTCGCTGCTGCCCAGGAGAAGCTGGCGGCCGTTAAAGCCAAGATTGCT
Seq C2 exon
CACCTTAATGAGAACCTGGCCAAACTCACAGCTAAGTTTGAGAAAGCAACAACCGACAAACTCAAATGTCAGCAAGAAGCTGAAGCGACCGCAGGCACCATCTCCCTTGCAAACCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'67-78,'67-76,68-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(25.0=100)
A:
PF127772=MT=FE(41.0=100)
C2:
PF127772=MT=FE(11.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGCTGAGGCAGAAGAA
R:
CGGTTTGCAAGGGAGATGGTG
Band lengths:
342-768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]