DreEX6041454 @ danRer10
Exon Skipping
Gene
ENSDARG00000060753 | pear1
Description
platelet endothelial aggregation receptor 1 [Source:ZFIN;Acc:ZDB-GENE-091230-1]
Coordinates
chr16:30535379-30537525:+
Coord C1 exon
chr16:30535379-30535500
Coord A exon
chr16:30536680-30536788
Coord C2 exon
chr16:30537389-30537525
Length
109 bp
Sequences
Splice sites
3' ss Seq
AATGTCTGTTTGTGTTTCAGCTG
3' ss Score
10.97
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GACCCCTGTCCAGTGAAGTGGTTTGGTCAGGGCTGTCGGCAAGAGTGTCAGTGTGGAACTGGAGGAATCTGCAATCAGACCACTGGAGAGTGTGTGTGCAAACAGGGCTTTACTGGAACTCT
Seq A exon
CTGTGAGGAGTCATGTCCGAGGCCAAAACGCTGTGCTGCACGCTGCCCGTGTCAGAACGGAGGAATCTGCCAGGGCAATGGGGTGTGTTTGTGTCCACCCGGCTGGATG
Seq C2 exon
GGTCCAGTTTGTACTGAACGGTGTCCACCAGGCCGTTTTGGTATAAACTGCTCTAAAGATTGTTTGTGCCATAACGGAGGTCACTGTGATCAAGAAAAGGGCCAGTGTCAGTGTGATGCAGGCTACACCGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060753-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PU(84.6=26.8)
A:
PF126612=hEGF=PD(7.7=2.7),PF126612=hEGF=PU(61.5=21.6)
C2:
PF126612=hEGF=PD(23.1=6.5),PF126612=hEGF=PU(84.6=23.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTCCAGTGAAGTGGTTT
R:
GGTGTAGCCTGCATCACACTG
Band lengths:
248-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]