RnoEX0064782 @ rn6
Exon Skipping
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187121935-187123456:-
Coord C1 exon
chr2:187123213-187123456
Coord A exon
chr2:187122258-187122378
Coord C2 exon
chr2:187121935-187122071
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCTCACCCCCTATTCCACAGCTG
3' ss Score
7.86
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
AGTGTGCTCCTGGAATGTGGGGACCACAGTGTGACAGGCTCTGCCTCTGTGGCAACAGCAGTTCCTGTGATCCCAGGAGTGGGGTGTGTTTTTGCCCCTCTGGCCTGCAGCCCCCCGACTGCCTTCAGCCTTGCCCCGATGGCCACTATGGTCCTGCCTGCCAGTTTGATTGCCATTGCTATGGGGCATCCTGTGACCCCCGGGATGGAGCCTGCTTCTGCCCCCCAGGGAGAACAGGACCCAG
Seq A exon
CTGTAATGTGCCCTGTTCACAGGGCACTGATGGCTTCTTCTGCCCCAGAACTTATCCTTGCCAAAATGGAGGTGTTCCTCAGGGCTCTCAAGGCTCCTGCAGCTGCCCACCGGGCTGGATG
Seq C2 exon
GGTGTCATCTGTTCCCTGCCATGCCCAGAGGGTTTCCACGGACCCAACTGTACTCAGGAATGTCGTTGCCACAATGGTGGCCTTTGTGACAGGTTTACTGGGCAGTGCCACTGTGCTCCTGGCTATATCGGGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243-'13-16,'13-13,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126612=hEGF=PU(84.6=23.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAGCAGTTCCTGTGAT
R:
AGTACAGTTGGGTCCGTGGAA
Band lengths:
248-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]