HsaEX0046534 @ hg19
Exon Skipping
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:33631]
Coordinates
chr1:156876429-156877843:+
Coord C1 exon
chr1:156876429-156876672
Coord A exon
chr1:156877402-156877522
Coord C2 exon
chr1:156877707-156877843
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCACCCACTCTGTCCTGCAGCTG
3' ss Score
8.85
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
AGTGTGCCCCAGGAATGTGGGGGCCACAGTGTGACAAGCCCTGCAGCTGCGGCAACAACAGCTCGTGTGATCCCAAGAGTGGGGTATGTTCTTGCCCTTCTGGTCTGCAGCCCCCGAACTGCCTTCAGCCCTGTACCCCTGGCTACTATGGCCCTGCCTGCCAGTTCCGCTGCCAGTGCCATGGGGCACCCTGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAGAACTGGGCCCAG
Seq A exon
CTGTGACGTGTCCTGTTCCCAGGGCACTTCTGGCTTCTTCTGCCCCAGCACCCATTCTTGCCAAAATGGAGGTGTCTTCCAAACCCCACAGGGCTCCTGCAGCTGCCCCCCTGGCTGGATG
Seq C2 exon
GGCACCATCTGCTCCCTGCCCTGCCCAGAGGGCTTTCACGGACCCAACTGCTCCCAGGAATGTCGCTGCCACAACGGCGGCCTCTGTGACCGATTCACTGGGCAGTGCCGCTGCGCTCCGGGTTACACTGGGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126612=hEGF=PU(61.5=19.5)
C2:
PF126612=hEGF=PD(23.1=6.5),PF126612=hEGF=PU(84.6=23.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGTGTGATCCCAAGAGTG
R:
GACATTCCTGGGAGCAGTTGG
Band lengths:
248-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)