DreEX6087559 @ danRer10
Exon Skipping
Gene
ENSDARG00000017229 | megf10
Description
multiple EGF-like-domains 10 [Source:ZFIN;Acc:ZDB-GENE-080506-1]
Coordinates
chr10:16150856-16151668:+
Coord C1 exon
chr10:16150856-16151102
Coord A exon
chr10:16151237-16151357
Coord C2 exon
chr10:16151532-16151668
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTTTTGGTGTCTCTGTGCAGCTG
3' ss Score
9.22
5' ss Seq
ATGGTACGC
5' ss Score
8.57
Exon sequences
Seq C1 exon
CGTGTGACCGTGATCACTGGGGCCCACACTGCAGTAGCCGGTGTCAGTGTAAGAACGAGGCGCTGTGTAACCCCATCACTGGAGCGTGCATATGTGCACCCGGGTACCATGGCTGGCGATGTGAAGACCTCTGTGACCATTCCACTTATGGCAACAATTGCCAACAGAAATGTCTGTGCCAGAATAATGCTACATGCCACCACATCACAGGCGAATGCGTGTGCAGTCCAGGATACACAGGAGCATT
Seq A exon
CTGTGAGGACTTGTGCCCTCCGGGAAAACATGGACAGCAATGTGAGGAGCGTTGTCCCTGTCAGAACGGTGGTGTGTGTCATCATGTGACTGGAGAATGTTCCTGTCCTGCTGGTTGGATG
Seq C2 exon
GGAATGGTGTGTGGACAACCCTGTCCGACGGGACGCTTTGGTAAGAACTGCTCACAGGAGTGTCAGTGTCATAATGGAGGAATCTGTTCGCCATCCACAGGACAGTGTGTGTGCAGTTCAGGATACACAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017229-'9-9,'9-7,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=55.4),PF126612=hEGF=PU(84.6=13.3)
A:
PF126612=hEGF=PD(7.7=2.4)
C2:
PF079748=EGF_2=PU(93.5=63.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGATGTGAAGACCTCTGTG
R:
TGAACTGCACACACACTGTCC
Band lengths:
253-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]